pluto.tools.run_cwl_toil¶

pluto.tools.run_cwl_toil(input_data, cwl_file, run_dir, output_dir=None, workDir=None, jobStore=None, tmpDir=None, logFile=None, input_json_file=None, print_command=False, restart=False, TOIL_ARGS=['--singularity', '--batchSystem', 'lsf', '--disableCaching', 'True', '--disable-user-provenance', '--disable-host-provenance', '--preserve-entire-environment', '--retryCount', '1', '--maxLocalJobs', '500', '--statePollingWait', '10', '--clean', 'onSuccess', '--cleanWorkDir', 'onSuccess'], input_is_file=False)[source]¶: Run a CWL using Toil